Summarise copy number signal over chromosome arms — summarise_chr_arm • scatools

Summarise copy number signal over chromosome arms

Usage

summarise_chr_arm(
  sce,
  assay_name,
  cn_granges = NULL,
  granges_signal_colname = NULL,
  genome_ver = "hg38"
)

Arguments

sce: SingleCellExperiment objet
assay_name: Name of assay
cn_granges: Optional: Copy number granges to integrate into the arm level bins
granges_signal_colname: Optional: Name of the column containing the CNA information in cn_granges
genome_ver: Genome version ("hg38" or "hg19")

Value

A chromosome arm level binned SingleCellExperiment