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Smooth outlier copy number counts

Source: R/cnv_tools.R
smooth_counts.Rd

Smooth outlier copy number counts

Usage

smooth_counts(
  sce,
  assay_name,
  ncores = 1,
  smooth_name = paste(assay_name, "smoothed", sep = "_")
)

Arguments

sce

SingleCellExperiment object

assay_name

Name of assay to smooth

ncores

Number of cores to use

smooth_name

Name of returned assay with smoothed counts

Value

A SingleCellExperiument Object