Scale and subset SCE assays
Usage
scale_sub(
sce,
assay_name = "counts",
log2 = FALSE,
scale = "none",
verbose = FALSE,
new_assay = NULL,
center = FALSE
)
Arguments
- sce
SingleCellExperiment
- assay_name
Assay to transform
- log2
Logical: log transform
- scale
One of :c("none", "cells", "bins", "both"). Specifies how scaling should be dome
- verbose
Message verbosity
- new_assay
New assay name
- center
Center the matrix
Value
A single cell experiment object