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Scale and subset SCE assays

Usage

scale_sub(
  sce,
  assay_name = "counts",
  log2 = FALSE,
  scale = "none",
  verbose = FALSE,
  new_assay = NULL,
  center = FALSE
)

Arguments

sce

SingleCellExperiment

assay_name

Assay to transform

log2

Logical: log transform

scale

One of :c("none", "cells", "bins", "both"). Specifies how scaling should be dome

verbose

Message verbosity

new_assay

New assay name

center

Center the matrix

Value

A single cell experiment object