Join SNP and scATAC depth
Usage
pseudo_join(
sce,
snp,
sce_assay = "counts",
ncores = 1,
group_var = NULL,
min_cov = 5,
sce_aggr_fun = mean
)
Arguments
- sce
sce obj
- snp
snp obj
- sce_assay
sce_assay to aggr
- ncores
Number of cores to speed up computation
- group_var
Column containing cell grouping information
- min_cov
Minumum coverage per SNP across pseudobulked cells to be included in the calculation
- sce_aggr_fun
fx for aggr