Clone Copy Number Comparison Plot
Usage
plot_clone_comp(
sce,
group_var = "clusters",
subset_clones = NULL,
subset_chr = NULL,
assay_name = "segment_merged_logratios",
center_point = NULL,
pt_size = 0.75,
xline = NULL,
yline = NULL,
lg_pt_size = 3,
pseudobulk_fun = mean
)Arguments
- sce
sce object
- group_var
column name with clone information
- subset_clones
optional vector of clones to subset for comparison
- subset_chr
optional vector of chromosomes to subset for comparison
- assay_name
name of assay to use
- center_point
Center point of the assay for drawing dashed lines
- pt_size
Size of the points in the plot
- xline
Numeric for X intercept line
- yline
Numeric for Y intecept line
- lg_pt_size
Size of the points in the legend
- pseudobulk_fun
mean or median