Plot Psuedobulk cell CNA profiles

Plot Psuedobulk cell CNA profiles

Usage

plot_cell_psuedobulk_cna(
  sce,
  assay_name,
  group_var = "all",
  aggr_fun = mean,
  col_fun = NULL
)

Arguments

sce

sce object

assay_name

Name of assay to plot

group_var

Grouping variable. If all will pseudobulk all cells

aggr_fun

Function to use to psuedobulk data

col_fun

Color mapping function from circlize::colorRamp2()

Value

ggplot