Loads binned atac reads, merges cell-wise and bin-wise metadata, and performs QC.
Usage
load_atac_bins(bin_dir, sample_id, bins = NULL, save_to = NULL, verbose = TRUE)
Arguments
- bin_dir
Directory with the bin counts
- sample_id
Sample ID
- bins
Optional: GRanges bins object
- save_to
File path in which to save the final output. Note: Will still return the sce object for downstream analysis.
- verbose
Message verbosity
Value
A SingleCellExperiment object.