bin_frags_chr computes the fragments across bins in a single chromosome from an ArchR ArrowFile
Usage
bin_frags_chr(fragments_chr, bins, cells, blacklist = NULL)
Arguments
- fragments_chr
A single chromosome fragments
- bins
Genomic ranges object with bins to use
- cells
A vector of cell barcodes. If not provided will use all barcodes
- blacklist
Genome blacklist regions to filter against
Value
Sparse matrix of binned fragment counts